The Milwaukee Brewers saw just one change to their farm system affiliations ending their agreement with Class A Advanced level Brevard County in the Florida State League and signing a two year developmental deal with the Carolina Mudcats in the Carolina League. Current agreements now have the affiliate lineups for AAA down to the A level through at least 2018.
Milwaukee Brewers 2017 Affiliates
| LEVEL | TEAM | LOCATION | LEAGUE | HISTORY |
| AAA | Colorado Springs Sky Sox | Colorado Springs, CO | Pacific Coast League | Affiliate since 2015 |
| AA | Biloxi Shuckers | Biloxi, MS | Southern League | Affiliate since 2015 |
| A+ | Carolina Mudcats | Zebulon, NC | Carolina League | Affiliate since 2017 |
| A | Wisconsin Timber Rattlers | Appleton, WI | Midwest League | Affiliate since 2009 |
| R | Helena Brewers | Helena, MT | Pioneer League | Affiliate since 2003 |
| R | AZL Brewers | Phoenix, AZ | AZL Arizona League | Affiliate since 2001 |
| DSL | DSL Brewers | Santa Domingo, Dominican Republic | Dominican Summer League | Affiliate since 2009 |
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